An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

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ID conversion file (format: NONCODE ID, Source, Source ID)

DataDownload AddressMD5
Source of NONCODE Transcripts (ID Conversion):NONCODEv5_source.gz4c4f5f536da527c474a28fab778672e3

Sequences of NONCODE

SpeciesDownload AddressMD5
HumanNONCODEv5_human.fa.gz85f2b95e704a9d1ffe6ecac6b444887e
MouseNONCODEv5_mouse.fa.gzd5cdaca99591746c4cd9b483ef4cd3f1
CowNONCODEv5_cow.fa.gz4e1c36b1774b40dc8c49fafe8e7fa69f
RatNONCODEv5_rat.fa.gz3e5eb5bddc88d2473383343ee8e2b9fb
ChickenNONCODEv5_chicken.fa.gzd771fa576e6dd386e24c585192bb737c
C.ElegansNONCODEv5_celegans.fa.gz73c8c2c671b61c2806147cead6965fc6
D.MelanogasterNONCODEv5_fruitfly.fa.gz90711cd04f73ec8791b39e623ab1360d
ZebrafishNONCODEv5_zebrafish.fa.gz7c915acbb26c83d89bbf54c8345bbdd5
A.ThalianaNONCODEv5_arabidopsis.fa.gzf32ae0fb62063b14c4182a55d39fe773
YeastNONCODEv5_yeast.fa.gz3f068ec1671cd6865d21b93df5ac4835
ChimpNONCODEv5_chimp.fa.gz349ae801226a52f015ad5230b0373800
GorillaNONCODEv5_gorilla.fa.gz81c6bb93ac866554f0c9a27407c94e2a
OrangutanNONCODEv5_orangutan.fa.gz58dff623e05c0b1364b226dabc34fce9
RhesusNONCODEv5_rhesus.fa.gzfa110411a7e83777b0703586e691da7f
OpossumNONCODEv5_opossum.fa.gz11cfab7b60185e48876013e17e5c9a4b
PlatypusNONCODEv5_platypus.fa.gz15aec74194aa0e2f94d86b49ce0d3ae8
PigNONCODEv5_pig.fa.gz09694f22b454a1598f167f9f92c1ea7b

LncRNA and LncRNA Genes Class Code of NONCODE

SpeciesDownload AddressMD5
HumanNONCODEv5_human_gene_cc.gzfee13ff6fa7e0ec0e89b26a7a820ad61
MouseNONCODEv5_mouse_gene_cc.gz621081c485e26227bfa5c5da99c28b70
CowNONCODEv5_cow_gene_cc.gz07daf2fbb70b52d3e7232e2de7af738e
RatNONCODEv5_rat_gene_cc.gze35260f4d4917ca9b99f3ffb71e1e242
ChickenNONCODEv5_chicken_gene_cc.gz96140ac425f05e2be772c8859fed13d2
C.ElegansNONCODEv5_celegans_gene_cc.gz7b83498237e27788e79647c8eee2d6a8
D.MelanogasterNONCODEv5_fruitfly_gene_cc.gz0dedb7682d2900f4e9c70e47826a328f
ZebrafishNONCODEv5_zebrafish_gene_cc.gze4cea3b0ca6100270a06183b25bc0a90
A.ThalianaNONCODEv5_arabidopsis_gene_cc.gz54085845003230381bc31ef4a3131666
YeastNONCODEv5_yeast_gene_cc.gz624e1839139a02cd33f849669a1d7267
ChimpNONCODEv5_chimp_gene_cc.gz2ff9e202289290ded65f60c8114974af
GorillaNONCODEv5_gorilla_gene_cc.gz0f0013e4987fdfd693313220d73104f7
OrangutanNONCODEv5_orangutan_gene_cc.gz639b820d5298b38a5c7ee542effdeb73
RhesusNONCODEv5_rhesus_gene_cc.gz4862a6296ce650df28422f9417c8e726
OpossumNONCODEv5_opossum_gene_cc.gzcc40ecf0b4478b06c4b12d5cdd5aae31
PlatypusNONCODEv5_platypus_gene_cc.gzab5f4e8e373564568f39986c212c40f5
PigNONCODEv5_pig_gene_cc.gzef8fa72dcde2fd88e49b023cf8660ca9

LncRNA and LncRNA Genes(Bed Format) of NONCODE

SpeciesDownload AddressMD5
HumanNONCODEv5_hg38.lncAndGene.bed.gzfb85737180ddd2154810ce7e75671275
MouseNONCODEv5_mm10.lncAndGene.bed.gz6b93a55569335e2544b11875f46eba09
CowNONCODEv5_bosTau6.lncAndGene.bed.gzcd9302df59d2737c5ef49f7234519e6f
RatNONCODEv5_rn6.lncAndGene.bed.gz0cd94e0c2dd2f6f7baaf7fb81dba4eae
ChickenNONCODEv5_galGal4.lncAndGene.bed.gzd01593a6bf426d8679d8a7187eedefa5
C.ElegansNONCODEv5_ce10.lncAndGene.bed.gzadbec0a3036c0610bbaf08112769d6f2
D.MelanogasterNONCODEv5_dm6.lncAndGene.bed.gz5f84a8b049b6654aeecbbc9b793edde6
ZebrafishNONCODEv5_danRer10.lncAndGene.bed.gz30f9c09a378a4e6b7ed72399f0f8a362
A.ThalianaNONCODEv5_tair10.lncAndGene.bed.gz6a44671d7d404e917533c6aa956a041b
YeastNONCODEv5_sacCer3.lncAndGene.bed.gz9e15e9d9c8b1849f6061c2e4f32a866e
ChimpNONCODEv5_panTro4.lncAndGene.bed.gz4cc5c3b41f7c5995b77164a7d8de415e
GorillaNONCODEv5_gorGor3.lncAndGene.bed.gz107761da32e0e3ce81a84cc0703f7128
OrangutanNONCODEv5_ponAbe2.lncAndGene.bed.gz91127932a67d15ed478e5d291e86c993
RhesusNONCODEv5_rheMac3.lncAndGene.bed.gz765ac3d8f3826ff24cafda047c495aa0
OpossumNONCODEv5_monDom5.lncAndGene.bed.gza51ed9a7ba079700ed5840677eb1a370
PlatypusNONCODEv5_ornAna1.lncAndGene.bed.gze2dc4a20fe0f2a828e647aad764f640c
PigNONCODEv5_susScr3.lncAndGene.bed.gz2ea2e0d253818d64af60e5ebd75287de

LncRNA and LncRNA Genes(Bed Format) of NONCODE (Other Assembly Version)

SpeciesDownload AddressMD5
HumanNONCODEv5_hg19.lncAndGene.bed.gz04cf48150be6e7063a683b1dd4f067f8
MouseNONCODEv5_mm9.lncAndGene.bed.gz7fb66bb08ed8a0c42fb92762dc528a99

Predicted Functions of NONCODE

SpeciesDownload AddressMD5
HumanNONCODEv5_human.func.gz2f1391a23c1ffa19dcb7ef4fdfff8be8
MouseNONCODEv5_mouse.func.gz9a7ebf7a02ecf3b88446d6af62bd6aa4

Expression Profile of NONCODE

SpeciesDownload AddressMD5
Human LncRNANONCODEv5_human.lncRNA.exp.gz14aba319e55fe0f3b52bd13d7236bc4a
Human LncRNA GeneNONCODEv5_human.gene.exp.gz63b589a07019b439819b8683a0f669f4
Mouse LncRNANONCODEv5_mouse.lncRNA.exp.gzbf806ad2cce8be1566f8e2b99d885e99
Mouse LncRNA GeneNONCODEv5_mouse.gene.exp.gzb8b3d3ff54ff0296d339f76abe0e1bbf
Human Exosome LncRNA GeneNONCODEv5_human_exosome_gene.fpkm.gzbff150b184fff45608f9616872baf1be
Human Exosome LncRNANONCODEv5_human_exosome_lncRNA.fpkm.gza66a35036a574ae892e412a6f6cdc7fc

Other tables for NONCODE

DataDownload AddressMD5
Transcript Map to GeneNONCODEv5_Transcript2Gene.gz3d5fa08b3818ba1dcd6f932392d0b0c8
Human LncRNA in gtf formatNONCODEv5_human_hg38_lncRNA.gtf.gz0ebb34c18e31a3c63b50edb7b1652434
Mouse LncRNA in gtf formatNONCODEv5_mouse_mm10_lncRNA.gtf.gz2bec256153316487dae4457e3c3025c7
Rat LncRNA in gtf formatNONCODEv5_rat_rn6_lncRNA.gtf.gz80e8a6f8bc5a66599c9511c8bc7bd5cb
Novel LncRNA in human T cellsNovel_lncRNA_in_T_cells.gtf.gzecdd2e15abbc0160833f95c8b6d4d690

This following links provide all the ncRNA data (in fasta format) in earlier versions of NONCODE.

ncRNA in NONCODE 2016
zip file (windows version):ncrna_NONCODE2016.fasta.zip 787a34ef8e7ce62854f41655f4720b36
zip file (linux version):ncrna_NONCODE2016.fasta.tar.gz0c0ac4203dca82df9fdaf2910b0f66f0
ncRNA in NONCODE v4.0
zip file (windows version):ncrna_NONCODE[v4.0].fasta.zip ecf9c3e12bb6ed856ba0477a13b68463
zip file (linux version):ncrna_NONCODE[v4.0].fasta.tar.gz46c8a992c9a7d1cee3473a89f475f20a
ncRNA in NONCODE v3.0
zip file (windows version):ncrna_NONCODE[v3.0].fasta.zip 6853946c150a38a3b62a7f81bc75f42e
zip file (linux version):ncrna_NONCODE[v3.0].fasta.tar.gz4c2da91a262087bb0ef34e40fae2d430
ncRNA in NONCODE v2.0
zip file (windows version):ncrna_NONCODE[v2.0].fasta.zipaba3aa00aa3c4b3eb39b105717e7cc69
zip file (linux version):ncrna_NONCODE[v2.0].fasta.tar.gz87129711c942a012f7dc87831049ee14
ncRNA in NONCODE v1.0
zip file (windows version):ncrna_NONCODE[v1.0].fasta.zipe1c5fb76ddf0b02835041a23169cc263
zip file (linux version):ncrna_NONCODE[v1.0].fasta.tar.gz8002f0b1cd16c12fc5127e484057bde1


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