NONCODE TRANSCRIPT ID NONHSAT000018.1
NONCODE Gene ID NONHSAG000008.3
Chromosome chr1
Start Site 89294
End Site 268126
Strand -
Exon Number 2
CNCI Score -0.0114688
Length 2373
Assembly hg38
Other transcript Versions NONHSAT000018.1 (old version)
Sequence
>NONHSAT000018.1
GCAAACTAAACAACAATGAAACAGAACAGAGTGAATCTGCTGTAGCTCAAGAGAGGACGTAGCTGCCCCCACTCCGCATCCCCGGGCTCGGGTTTGCCTTGCTGACCTCTGCTGCCACCTGGTGCTGCACAGAGAAACTGAGGAGAAACCACATCAGTCTCCTTCAGCCTCAGCTTCACATCTGTGGGTCAAGCAACCCTTTCAGAAGCTGTATAATGTGGGAAAGCTTTCCTCTCAGGAAAATGCACACATCCAACTTTGAGAAGATGCCCTTGGGGGTGCTTCAAGGATCCTAGATAATAACCCCCTTTCCCGAACATCCAAGAACCTAAGttttttttttttttttgagaaagtctcgctctctctcccattctggagtgcagtggcgtgatcttggctcactgcaagctccacctcccaggttcaagccattctcctgcctcagcctcccaagtagctggggctacaggcacctgccaccacacccggctaatttttttgtatttttagtagagacggggtttcaccgtgttagccagaatcgtcttgatctcctgaccttgtgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccacgcctggtcCAAGAACCCAACTTTTAGATCTAGAGTGATGTCAGCATGACATTGATTTCCTGAGGCCCAGGGGTGAAGGAGCTGAGGACAGCAGAGGGGTGAAGGAAGTCAGCTACAGACAGCAGCAGCTGATGCACAGGCCTCCCAGTGCCTGAAGTCACCCGGAATTGGGAAGTGCTCAGAAGCTTACAAAGCTGCCTCGAGGTGGGAACACAACATTAATCCAAGAGCAGATCCCTGATCCTATAAAAATGTACTAGATGCAGTGGGGGCATTTTAAATGAGCAGGGAAGgacagacagataaacagaaggacaaacagTATTGGGATTGGGATAAATGCTCAGCTTTTGcccaaatcttagtgacttaagcatcacttatttgctcacgattctgtggctggaccatttggtttggctcacagggcagggactgtgctggtcttacctgagcagacctgcatgtctgcggtcaactgggttggcagagacagagtgactgtcttcctccaggaagcagcaggttaactggttggcagagacagagggactgagggactgtctccctccaggaagcagcaggttaactggttggcagagacagagggacagagggactgtcttcctccaggaagcagcagGTTAACTGGTTGGCAGAGACAGAGGGACAGAGGGACTGTCTTCCTCCAGGAAGCAGCAGGTTAACTGGTTGGCAGAGACAGAGGGACAGAGGGACTGTCTTCCTCCAGGAAGCAGCAGGTTAACTGGTTGGCAGAGACAGAGGGACTGAGGGACTGTCTTCCTCCATGAAGCAGCAGGTTAACTGGTTGGCAGAGACAGAGGGACTGAGGGACTGTCTTCCTCCAGGAAGCAGCAGGTTAACTGGTTGGCAGAGACAGAGGGACTGAGGGACTGTCTTCCTCCAGGAAGCAGCAGGTTAACTGATTGGCAGAGACAGAGGGACTGAGGGACTGTCTCCCCCCAGGAAGcagcaggttggctctgtttccttcgtggggcagctggtctccagggcagcaagagagaccaagccccagtgcacattctacagcctctgtgcacatcagacttgttaatatcccattggccagtgtaagtcacttggccaagcccagattaaggagtggaaagatggaggctatctcctcctgggagaggaggcaaagGAGGTGGGAGTATTATGTGGCCACTTATGTTTGCAATCTACCATACTTAGCACTTTGAGAAAAGAATTAACTGAGAAACTTGCTTCAAATAGGGCCAGTAAAATGAAGCCCCAATTGAAGTAAAATGCATATATAAAAAATGAAACTGTGACCGATTTTAAGGACAGTATTGGCAAATATTTCTGTGCTCTTGGAGGAGAAGACCCTTATTGGCATGACATGTCAGAAACCACAATGAAAGAATTATTTTAACTTGCATTCATAAAAATTAAAATTATTCATTAAAAACATCGTGAATGAAATTAAAAGTCAAAATGTAAGCCAGAAAATTATTTACAACGTATGTGTCAGGAAAAGACAATACCCTTCAAACTTTGAGAGTTTACATCAGAAAGAAAACAGCAAATGACATGATCCAAACTTGATAAAGGACATGAAAAAGAGCCAGCACTTAGTATGTTTTCTGAATGAATAAGTagccaacagcacatgaaaatgcgtgtaatccatttgtaagcagagaaatgcaaactaaaacagtaaagtgtcattttcacttcctgg
Expression Profile(Data Source:Human Body Map ) NAExosome Expression Profile(Data Source: NCBI GEO ) NAStructure Visualization No structure predicted!
DataSource: show detail information
See experimental data visualization in DMS dataset or PARS dataset
The following is the detail information of RNA secondary structure predicttion.
We use software RME to predict RNA Second Structure.
We select two datasets respectively from PARS and DMS-seq to predict. However, it only predicted minority RNA secondary structures through dataset correction with the limitation of sequencing data coverage. So many transcripts only have RNA secondary structure information predicted without experimental data. If the transcript do have sequencing data covered, you can switch "DataSource" to see the RNA secondary structure predicted based on different datasets.
We use forna to show the result. The color just correspond to the predicted structure and has no relation to experimental data.
If you want more detail infomation of RNA secondary structure of this transcript, please visit website http://RNAex.ncrnalab.org/
Isoforms Data Sources